Journal Articles
- Bongshin Lee, Kristy Brown, Yetrib Hathout, and Jinwook Seo, "GOTreePlus: An Interactive Gene Ontology Browser," Bioinformatics, Vol. 24, No. 7, pp. 1026-1028, 2008.
- Jinwook Seo and Heather Gordish-Dressman, "Exploratory Data Analysis with Categorical Variables: An Improved Rank-by-Feature Framework and a Case Study," International Journal of Human-Computer Interaction, Vol 23, No. 3, pp. 287-314, 2007.
- Bohyoung Kim, Bongshin Lee and Jinwook Seo, "Visualizing Set Concordance with Permutation Matrices and Fan Diagrams," Interacting with Computers, Vol. 19, Issue 5-6, pp. 630-643, 2007.
- Jinwook Seo and Eric P. Hoffman, "Probe set algorithms: Is there a rational best bet?" BMC Bioinformatics 7:395, 2006. (One of the highly accessed articles in the journal)
- Jinwook Seo and Ben Shneiderman, "Knowledge Discovery in High Dimensional Data: Case Studies and a User Survey for the Rank-by-Feature Framework," IEEE Transactions on Visualization and Computer Graphics, Vol. 12, No. 3, pp. 311-322, 2006.
- Jinwook Seo, Heather Gordish-Dressman and Eric P. Hoffman, " An Interactive Power Analysis Tool for Microarray Hypothesis Testing and Generation," Bioinformatics, Vol. 22, No. 7, pp. 808-814, 2006.
- Marina Bakay, Zuyi Wang, Gisela Melcon, Louis Schiltz, Jianhua Xuan, Po Zhao, Vittorio Sartorelli, Jinwook Seo, Elena Pegoraro, Corrado Angelini, Ben Shneiderman, Diana Escolar, Yi-Wen Chen, Sara T. Winokur, Chenguang Fan, Raul Mandler, Yoram Nevo, Erynn Gordon, Yitan Zhu, Yibin Dong, Yue Wang and Eric P. Hoffman, "Nuclear envelope dystrophies show a transcriptional fingerprint suggesting disruption of Rb-MyoD pathways in muscle regeneration," Brain, Vol. 129 No. 4, pp 996-1013, 2006.
- Jinwook Seo and Ben Shneiderman, "A Rank-by-Feature Framework for Interactive Exploration of Multidimensional Data," Information Visualization, Vol. 4, No. 2, pp. 99-113, 2005. (pdf)
- Jinwook Seo, Marina Bakay, Yi-Wen Chen, Sara Hilmer, Ben Shneiderman and Eric P Hoffman, " Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays," Bioinformatics, Vol. 20, pp. 2534-2544, 2004. [PubMed]
- Po Zhao, Jinwook Seo, Zuyi Wang, Yue Wang, Ben Shneiderman and Eric P Hoffman, "In vivo filtering of in vitro MyoD target data: An approach for identification of biologically relevant novel downstream targets of transcription factors," Comptes Rendus Biologies, Vol. 326, Issues 10-11, pp. 1049-1065O, October-November 2003. (pdf)
- Jinwook Seo and Ben Shneiderman, "Interactively Exploring Hierarchical Clustering Results," Computer, Vol. 35, No. 7, pp. 80-86, July 2002. (pdf)[initial draft]
- Bo Hyoung Kim, Jinwook Seo and Yeong Gil Shin, "Binary Volume Rendering using the Slice-based Binary Shell," The Visual Computer, Vol. 17, Issue 4, pp.243-257, 2001.
- Bo Hyoung Kim, Jinwook Seo and Yeong Gil Shin, "A Representation Method of Binary Volume Data for Efficient Rendering", Journal of KISS (Korea Information Science Society), Vol. 27, No. 5, 2000.
Conference Papers and Posters
- Bohyoung Kim, Bongshin Lee, and Jinwook Seo, "Visualizing Set Concordance with Permutation Matrix and Fan Diagram," IEEE Symposium on Information Visualization 2006 (Interactive Poster).
- Jinwook Seo and Ben Shneiderman, "A Rank-by-Feature Framework for Unsupervised Multidimensional Data Exploration Using Low Dimensional Projections," IEEE Symposium on Information Visualization 2004, pp. 65-72. (pdf) Extended version was invited to the journal, Information Visualization.
- Jinwook Seo, Marina Bakay, Po Zhao, Yi-Wen Chen, Priscilla Clarkson, Ben Shneiderman, Eric P Hoffman, "Interactive Color Mosaic and Dendrogram Displays for Signal/Noise Optimization in Microarray Data Analysis, IEEE International Conference on Multimedia and Expo 2003, pp III-461~III-464. (pdf)
- Jinwook Seo, "Interactive Exploration of Hierarchical Clustering Results: Scale up to Affymetrix Data, " NCRR Bioinformatics Conference, Boston, MA, September 2002 (Poster).
Book Chapters
- Jinwook Seo and Ben Shneiderman, "Knowledge Integration Framework for Information Visualization," Lecture Notes in Computer Science Vol. 3379, pp. 207-220, Springer-Verlag, Berlin Heidelberg New York, 2005. (pdf)
Technical Reports and Others
- Bohyoung Kim, Bongshin Lee, and Jinwook Seo, "Visualizing Concordance of Sets," Tech. Report, HCIL-2006-07, April 2006.
- Devaney JM, Zhao P, Gordish-Dressman H, Thompson PD, Clarkson PM, Reeves E, Price TB, Angelopoulos TJ, Gordon PM, Moyna NM, Pescatello LS, Visich PS, Zoeller RF, Seip RL, Harmon B, Bilbie S, Seo J, Kim BH, Uthurralt J, Tesi-Rocha C, Tosi L, and Hoffman EP, "Upstream haplotypes of the AKT1 gene are important QTLs in muscle, fat, and bone," under review for a journal.
- Jinwook Seo, Marina Bakay, Yi-Wen Chen, Sara Hilmer, Ben Shneiderman, Eric P Hoffman, "Building a Coherent Data Pipeline in Microarray Data Analyses: Optimization of Signal/Noise Ratios Using an Interactive Visualization Tool and a Novel Noise Filtering Method," Technical Report, HCIL-2003-44, 2003.
- Jinwook Seo and Ben Shneiderman, "Using Categorical Information in Multidimensional Data Sets: Interactive Partition and Cluster Comparison," Tech. Report, HCIL-2005-12, CS-TR-4752, UMIACS-TR-2005-55, ISR-TR-2005-102, May 2005.
- Jinwook Seo and Ben Shneiderman, "Understanding Clusters in Multidimensional Spaces: Making Meaning by Combining Insights from Coordinated Views of Domain Knowledge," Technical Report, HCIL-2004-03, 2004.
- Jinwook Seo and Ben Shneiderman, "Interactive Exploration of Multidimensional Microarray Data: Scatterplot Ordering, Gene Ontology Browser, and Profile Search," Tech. Report, HCIL-2003-25, CS-TR-4486, UMIACS-TR-2003-55, ISR-TR-2005-68, April 2003.